sa-lee/fluentGenomics: A plyranges and tximeta workflow

An extended workflow using the plyranges and tximeta packages for fluent genomic data analysis. Use tximeta to correctly import RNA-seq transcript quantifications and summarize them to gene counts for downstream analysis. Use plyranges for clearly expressing operations over genomic coordinates and to combine results from differential expression and differential accessibility analyses.

Getting started

Package details

Bioconductor views BasicWorkflow GeneExpressionWorkflow Workflow
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
sa-lee/fluentGenomics documentation built on July 5, 2023, 7:42 p.m.