cache-se: Download, retrieve and cache macrophage ATAC seq results
In sa-lee/fluentGenomics: A plyranges and tximeta workflow
cache_atac_se R Documentation
Download, retrieve and cache macrophage ATAC seq results
Description
Download, retrieve and cache macrophage ATAC seq results
Usage
cache_atac_se(verbose = FALSE)
Arguments
verbose
Provide progress bar for downloading and updating the cache?
(Default is FALSE)
Details
This code generates the SummarizedExperiment object
used for ATAC seq peaks data analysis as discussed in the vignette.
Value
the path to the .rds file containing the SummarizedExperiment
Source
https://zenodo.org/record/1188300/files/
Examples
if (interactive()) {
path_to_se <- cache_atac_se()
atac <- readRDS(path_to_se)
}
sa-lee/fluentGenomics documentation built on July 5, 2023, 7:42 p.m.
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| cache_atac_se | R Documentation |
Download, retrieve and cache macrophage ATAC seq results
Description
Download, retrieve and cache macrophage ATAC seq results
Usage
cache_atac_se(verbose = FALSE)
Arguments
verbose |
Provide progress bar for downloading and updating the cache? (Default is FALSE) |
Details
This code generates the SummarizedExperiment object used for ATAC seq peaks data analysis as discussed in the vignette.
Value
the path to the .rds file containing the SummarizedExperiment
Source
https://zenodo.org/record/1188300/files/
Examples
if (interactive()) {
path_to_se <- cache_atac_se()
atac <- readRDS(path_to_se)
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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