cache-se: Download, retrieve and cache macrophage ATAC seq results

Description Usage Arguments Details Value Source Examples

Description

Download, retrieve and cache macrophage ATAC seq results

Usage

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cache_atac_se(verbose = FALSE)

Arguments

verbose

Provide progress bar for downloading and updating the cache? (Default is FALSE)

Details

This code generates the SummarizedExperiment object used for ATAC seq peaks data analysis as discussed in the vignette.

Value

the path to the .rds file containing the SummarizedExperiment

Source

https://zenodo.org/record/1188300/files/

Examples

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if (interactive()) {
 path_to_se <- cache_atac_se()
 atac <- readRDS(path_to_se)
}

sa-lee/fluentGenomics documentation built on May 23, 2020, 11:26 p.m.