peaks: Summarised ATAC-seq peaks as a GRanges object
In sa-lee/fluentGenomics: A plyranges and tximeta workflow
peaks R Documentation
Summarised ATAC-seq peaks as a GRanges object
Description
A GRanges object containing approximately 300,000 differential
accessiblity peaks estimated via limma. A description of how
this object was generated can be found in the vignette.
Usage
peaks
Format
An object of class GRanges of length 296220.
Details
#' @format A GRanges with 296220 rows and 3 metadata columns:
- peak_id
the ATAC peak identifer
- da_log2FC
the estimated log2 fold change
- da_padj
the estimated differential accessibility FDR adjusted p-value
sa-lee/fluentGenomics documentation built on July 5, 2023, 7:42 p.m.
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| peaks | R Documentation |
Summarised ATAC-seq peaks as a GRanges object
Description
A GRanges object containing approximately 300,000 differential accessiblity peaks estimated via limma. A description of how this object was generated can be found in the vignette.
Usage
peaks
Format
An object of class GRanges of length 296220.
Details
#' @format A GRanges with 296220 rows and 3 metadata columns:
- peak_id
the ATAC peak identifer
- da_log2FC
the estimated log2 fold change
- da_padj
the estimated differential accessibility FDR adjusted p-value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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