peaks: Summarised ATAC-seq peaks as a GRanges object

Description Usage Format Details

Description

A GRanges object containing approximately 300,000 differential accessiblity peaks estimated via limma. A description of how this object was generated can be found in the vignette.

Usage

1

Format

An object of class GRanges of length 296220.

Details

#' @format A GRanges with 296220 rows and 3 metadata columns:

peak_id

the ATAC peak identifer

da_log2FC

the estimated log2 fold change

da_padj

the estimated differential accessibility FDR adjusted p-value


sa-lee/fluentGenomics documentation built on May 23, 2020, 11:26 p.m.