PlotOutliers: PlotOutliers

View source: R/5_plotFunctions.R

PlotOutliersR Documentation

PlotOutliers

Description

Visual overview of outliers

Usage

PlotOutliers(fsom, outlierReport)

Arguments

fsom

FlowSOM object.

outlierReport

Outlier overview as generated by TestOutliers()

Value

Plot

Examples


# Identify the files
fcs <- flowCore::read.FCS(system.file("extdata", "68983.fcs", 
                                      package = "FlowSOM"))
# Build a FlowSOM object
flowSOM.res <- FlowSOM(fcs, 
                       scale = TRUE,
                       compensate = TRUE, 
                       transform = TRUE,
                       toTransform = 8:18, 
                       colsToUse = c(9, 12, 14:18),
                       nClus = 10,
                       seed = 1)
outlierReport <- TestOutliers(flowSOM.res)
p <- PlotOutliers(flowSOM.res, outlierReport)                       


saeyslab/FlowSOM documentation built on July 6, 2024, 10:59 a.m.