get_weighted_ligand_receptor_links: Get the weighted ligand-receptor links between a possible...

In saeyslab/nichenetr: Modeling Intercellular Communication by Linking Ligands to Target Genes with NicheNet

Get the weighted ligand-receptor links between a possible ligand and its receptors

Description

get_weighted_ligand_receptor_links Get the weighted ligand-receptor links between a possible ligand and its receptors

Usage

get_weighted_ligand_receptor_links(
  best_upstream_ligands,
  expressed_receptors,
  lr_network,
  weighted_networks_lr_sig
)

Arguments

best_upstream_ligands	Character vector containing ligands of interest.
expressed_receptors	Character vector of receptors expressed in the cell type of interest.
lr_network	A data frame with two columns, from and to, containing the ligand-receptor interactions.
weighted_networks_lr_sig	A data frame with three columns, from, to and weight, containing the ligand-receptor interactions and their weights.

Examples

## Not run: 
  ligand_receptor_links_df <- get_weighted_ligand_receptor_links(best_upstream_ligands, expressed_receptors, lr_network, weighted_networks$lr_sig)

## End(Not run)

saeyslab/nichenetr documentation built on Sept. 7, 2024, 10:27 a.m.