make_circos_plot: Draw a circos plot

In saeyslab/nichenetr: Modeling Intercellular Communication by Linking Ligands to Target Genes with NicheNet

Draw a circos plot

Description

Draw a circos plot

Usage

make_circos_plot(vis_circos_obj, transparency = FALSE, args.circos.text = list(), ...)

Arguments

vis_circos_obj	Object returned by prepare_circos_visualization
transparency	Logical indicating whether the transparency of the links will correspond to the ligand-target potential score (default: FALSE)
args.circos.text	List of arguments to pass to circos.text (by default, the text size is set to 1)
...	Additional arguments to pass to chordDiagram

Value

A circos plot

Examples

## Not run: 
# Default
make_circos_plot(vis_circos_obj, transparency = FALSE)

# Transparency
make_circos_plot(vis_circos_obj, transparency = TRUE)

# Make text smaller
make_circos_plot(vis_circos_obj, transparency = TRUE, args.circos.text = list(cex = 0.5))

# Don't sort links of each ligand based on widths (not recommended)
make_circos_plot(vis_circos_obj, transparency = TRUE, args.circos.text = list(cex = 0.5), link.sort = FALSE)

## End(Not run)

saeyslab/nichenetr documentation built on Sept. 7, 2024, 10:27 a.m.