ModelList-class: Sampled models and scores

In saezlab/PHONEMeS-ILP: Building logic-based models from discovery high-content phosphoproteomics data

Sampled models and scores

Description

This class contains a model sampled during optimisation, and associated scores

Objects from the Class

Objects of class ModelList can be created from new("ModelList", model=model, scores=scoresT, scoresList=scores.dataOn, intAnd=intermediates.AND.or, intgAnd=integrators.AND.or)

Slots

model:

data frame, subset of an interactions element from a PKNlist

scores:

numeric, total score for a network

scoresList:

list, scores by conditions and treatments

intAnd:

logical, for each intermediate, are the incoming edges combined with an AND or not

intgAnd:

logical, for each integrator, are the incoming edges combined with an AND or not

Methods

An overview of methods with class-specific functionality: More detailed introduction can be found in help for each specific function.

run1model

samples and runs one model

Author(s)

C. Terfve [e-mail]

See Also

run1model

saezlab/PHONEMeS-ILP documentation built on June 21, 2022, 5:36 p.m.