nodesData: Nodes On/Off in a network, given some data

In saezlab/PHONEMeS-ILP: Building logic-based models from discovery high-content phosphoproteomics data

Nodes On/Off in a network, given some data

Description

This function extracts the nodes that are On/Off in a network, according to a given dataset

Usage

nodesData(data.On, dataGMM, pknList)

Arguments

data.On	a GMMbyCond object as created by dataBycond
dataGMM	a GMMres object
pknList	a PKNlist object

Value

This function returns a list that contains elements On, Off, Onlist and Offlist, which contain character vectors of names of nodes that are On/Off in the network given by pknList, according to the data in data.On and dataGMM, either as single character vectors (On, Off) or organised by condition and treatments like in data.On (Onlist, Offlist).

Author(s)

C. Terfve

saezlab/PHONEMeS-ILP documentation built on June 21, 2022, 5:36 p.m.