sinkWeights: Sinks weight correction

In saezlab/PHONEMeS-ILP: Building logic-based models from discovery high-content phosphoproteomics data

Sinks weight correction

Description

Computes the correction to edges weight for sink nodes, based on a set of solution models

Usage

sinkWeights(pknList=pknList, optParam=optParam, models.sel.comb=models.sel.comb, models.sel=models.sel)

Arguments

optParam	an OptParam object with at least the element cap (numeric, maximum number of interactions that get copied)
pknList	a PKNlist object that has at least elements: sinks (a character vector of sinks nodes names), interactions (the starting, complete, interactions data frame)
models.sel.comb	data frame of combined solution networks
models.sel	list of solution networks

Value

a data frame of interactions to be copied

Author(s)

C. Terfve

saezlab/PHONEMeS-ILP documentation built on June 21, 2022, 5:36 p.m.