Man pages for saezlab/decoupleRBench
Benchmark of decoupleR methods.
| bench_format | Function to format benchmarking results |
| BenchResult-class | S4 Class used to format benchmark output. |
| calc_curve | This function takes the elements of the 'activity' column and... |
| check_preced | Helper Function that checks if the preceding vector element... |
| filter_sets | Helper Function to filter and format the gene set resource |
| format_design | Helper Function to to generate the bools used to check if the... |
| format_roc | Helper function to format (Precision-Recall) Receiver... |
| get_auroc_heat | Helper function to produce AUROC heatmap |
| get_bench_summary | Function that provides summary and plots for the benchmark... |
| input_tibble | Benchmark input tibble containing the (experimental) design... |
| net_noise | This function takes a network and either adds or deletes a... |
| net_weight | This function takes a network and removes weight and/or... |
| prepare_for_roc | Helper function used to prepare 'activity' elements or... |
| readRDS_helper | 'base::readRDS' helper function that enables loading files... |
| run_benchmark | Benchmark pipeline built on the statistical method wrapper... |
| run_eval | Run evaluation of results from decouple. |
| run_methods | Run decouple on a design matrix. |
