input_tibble: Benchmark input tibble containing the (experimental) design...

In saezlab/decoupleRBench: Benchmark of decoupleR methods.

Benchmark input tibble containing the (experimental) design for each of the benchmark runs corresponding to rows

Description

Benchmark input tibble containing the (experimental) design for each of the benchmark runs corresponding to rows

Arguments

set_name	user-defined name of the set resource
bench_name	user-defined name of the benchmark data
stats_list	List of statistics to run
opts_list	Named list containing the options for each stat. method
bexpr_loc	benchmark expression data location (.rds format tibble)
bmeta_loc	benchmark metadata location (.rds format tibble)
source_loc	set source (e.g. network resource, gene ontology sets, kinase sets, etc.) location (.rds format tibble)
source_col	name of the column with the source for the set source
target_col	name of the column with the targets for the set source
filter_col	name of the column by which we wish to filter
filter_crit	criteria by which we wish to filter the filter_col

Details

A tibble with locations, options, and filter options for the desired benchmark setting

saezlab/decoupleRBench documentation built on March 20, 2022, 3:02 p.m.