run_benchmark: Benchmark pipeline built on the statistical method wrapper...

In saezlab/decoupleRBench: Benchmark of decoupleR methods.

Benchmark pipeline built on the statistical method wrapper decouple.

Description

Benchmark pipeline built on the statistical method wrapper decouple.

Usage

run_benchmark(
  .design,
  .form = TRUE,
  .perform = TRUE,
  .minsize = 5,
  .silent = TRUE,
  .downsample_pr = FALSE,
  .downsample_roc = FALSE,
  .downsample_times = 100,
  .url_bool = FALSE
)

Arguments

.form	bool whether to format or not
.perform	bool whether to calculate ROC and performance summary
.minsize	minimum size of each set
.silent	bool whether to silence wanring messages
.downsample_pr	whether to downsample precision recall curve TNs
.downsample_roc	whether to downsample ROC true negatives
.downsample_times	downsampling iterations
.url_bool	bool whether the location is a url or not

Value

An S4 object of BenchResult-class

See Also

See input_tibble for a description of the params/columns of .design (i.e. input tibble).

saezlab/decoupleRBench documentation built on March 20, 2022, 3:02 p.m.