filter_sets: Helper Function to filter and format the gene set resource

In saezlab/decoupleRBench: Benchmark of decoupleR methods.

Helper Function to filter and format the gene set resource

Description

Helper Function to filter and format the gene set resource

Usage

filter_sets(set_source, source_col, filter_col, filter_crit, .minsize, .silent)

Arguments

set_source	Set Source (e.g. TF regulon sets, GO:term sets, etc)
source_col	name of the column with the source for the set source
filter_col	name of the column by which we wish to filter
filter_crit	criteria by which we wish to filter the filter_col
.minsize	minimum size of each set
.silent	bool whether to silence wanring messages

Details

Filtering can be omitted if filter_col is NA.

Value

returns a filtered and formatted set source

saezlab/decoupleRBench documentation built on March 20, 2022, 3:02 p.m.