mean_permute: Function to calculate mean LR expression from shuffled...

mean_permuteR Documentation

Function to calculate mean LR expression from shuffled cluster label matrices as done in CellPhoneDB

Description

Function to calculate mean LR expression from shuffled cluster label matrices as done in CellPhoneDB

Usage

mean_permute(col_labels, sce, pb, assay.type)

Arguments

col_labels

cluster labels

sce

single cell experiment object

pb

progress bar object

assay.type

assay type (counts, logcounts, etc)

Value

Returns a list of means per gene calculated with reshuffled cluster/cell identity labels


saezlab/ligrec_decoupler documentation built on Aug. 10, 2024, 8:56 a.m.