Resample.DecayDE: Decay of Differential Expression step

In sahildshah1/gene-surrounder: GeneSurrounder

Description

Decay of Differential Expression tests whether the magnitude of differential expression of other genes j in the neighborhood is inversely related to the distance d(i,j) of gene j from gene i

Usage

Resample.DecayDE(distance.matrix, gene.id, genes.assayedETnetwork, diameter,
  perm.geneStats.matrix, sizes)

Arguments

distance.matrix	A matrix of the distances on the global network
gene.id	The name of the gene to which GeneSurrounder is applied
genes.assayedETnetwork	The names of the genes that are assayed and on the network
diameter	The diameter of the global network
perm.geneStats.matrix	A matrix of the resampled differential expression
sizes	The number of genes assayed and on the network in each neighborhood

sahildshah1/gene-surrounder documentation built on May 27, 2019, 7:27 a.m.