Resample.SI: Sphere of Influence Step

In sahildshah1/gene-surrounder: GeneSurrounder

Description

Sphere of Influence assesses if a candidate gene i meets the first criterion by testing if gene i is more strongly correlated with its network neighbors than with a random set of genes

Usage

Resample.SI(gene.id, distance.matrix, cor.matrix, diameter,
  num.Sphere.resamples = 1000, genes.assayedETnetwork)

Arguments

gene.id	The name of the gene to which GeneSurrounder is applied
distance.matrix	A matrix of the distances on the global network
cor.matrix	A matrix of correlations between the expression of the genes
diameter	The diameter of the global network
num.Sphere.resamples	defaults to 1000. The number of resamples when running the Sphere of Influence Procedure
genes.assayedETnetwork	The names of the genes that are assayed and on the network

sahildshah1/gene-surrounder documentation built on May 27, 2019, 7:27 a.m.