README.md
In saketkc/covmuller: A tool to model COVID19 variant prevalence using data from GISAID
Covmuller
Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID.
Features
Covmuller currently supports the following features:
- Read and preprocess metadata file downloaded from GISAID: Vignette
- Plot variant prevalence: Vignette
- Fit multinomial models to variant prevalence data:
- Estimate totals prevalence of variants by projecting case prevalence data on multinomila fits:
saketkc/covmuller documentation built on April 19, 2024, 10:14 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Covmuller
Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID.
Features
Covmuller currently supports the following features:
- Read and preprocess metadata file downloaded from GISAID: Vignette
- Plot variant prevalence: Vignette
- Fit multinomial models to variant prevalence data:
- Estimate totals prevalence of variants by projecting case prevalence data on multinomila fits:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.