CombineSequencedCases: Create a combined dataframe of sequenced cases and confirmed...

In saketkc/covmuller: A tool to model COVID19 variant prevalence using data from GISAID

Create a combined dataframe of sequenced cases and confirmed cases

Description

Create a combined dataframe of sequenced cases and confirmed cases

Usage

CombineSequencedCases(
  cases_sequenced,
  confirmed_long,
  prune_oversequenced = TRUE,
  month.min = NULL,
  month.max = NULL,
  max.percent = 100
)

Arguments

cases_sequenced	A long dataframe of per state sequenced cases
prune_oversequenced	Whether to round of percentages above 100 to 100. Default is TRUE
cases_total	A long dataframe of total monthly cases

Value

a combined dataframe with case load and sequenced

saketkc/covmuller documentation built on April 19, 2024, 10:14 a.m.