CollapseLineageToVOCs: Collpase pangolin lineage a list of VOCs
In saketkc/covmuller: A tool to model COVID19 variant prevalence using data from GISAID
CollapseLineageToVOCs R Documentation
Collpase pangolin lineage a list of VOCs
Description
Collpase pangolin lineage a list of VOCs
Usage
CollapseLineageToVOCs(
variant_df,
vocs = GetVOCs(),
custom_voc_mapping = NULL,
summarize = TRUE
)
Arguments
variant_df
A dataframe with "pangolin_lineage" column
vocs
A named list with VOC (variant of concernt) name as key and a list of lineages under the VOC.
The method will replace all lineages under a VOC to its name.
custom_voc_mapping
A named vector with a custom mapping for naming some lineages. See example.
Value
A dataframe with a new column "lineage_collpased".
saketkc/covmuller documentation built on April 19, 2024, 10:14 a.m.
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| CollapseLineageToVOCs | R Documentation |
Collpase pangolin lineage a list of VOCs
Description
Collpase pangolin lineage a list of VOCs
Usage
CollapseLineageToVOCs(
variant_df,
vocs = GetVOCs(),
custom_voc_mapping = NULL,
summarize = TRUE
)
Arguments
variant_df |
A dataframe with "pangolin_lineage" column |
vocs |
A named list with VOC (variant of concernt) name as key and a list of lineages under the VOC. The method will replace all lineages under a VOC to its name. |
custom_voc_mapping |
A named vector with a custom mapping for naming some lineages. See example. |
Value
A dataframe with a new column "lineage_collpased".
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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