Man pages for sales-lab/graphite
GRAPH Interaction from pathway Topological Environment

as.list.DeprecatedPathwayListConvertion of DeprecatedPathwayLists into lists.
as.list.PathwayListConvertion of PathwayLists into lists.
biocartaBioCarta pathways
buildPathwayBuild a Pathway object.
convertIdentifiersConvert the node identifiers of a pathway.
cytoscapePlotPlot a pathway graph in Cytoscape
DeprecatedPathwayList-classClass '"DeprecatedPathwayList"'
humancycHumancyc pathways
keggKEGG pathways
nciNCI pathways
pantherPanther pathways
Pathway-classClass '"Pathway"'
pathwayDatabasesList the available pathway databases.
pathwayGraphGraph representing the topology of a pathway
PathwayList-classClass '"PathwayList"'
pathwaysRetrieve a list of pathways.
Pathways-classClass '"Pathways"'
prepareSPIAPrepare pathway dataset needed by runSPIA.
reactomeReactome pathways
runClipperRun a topological analysis on an expression dataset using...
runClipperMultiRun a topological analysis on an expression dataset using...
runDEGraphRun a topological analysis on an expression dataset using...
runDEGraphMultiRun a topological analysis on an expression dataset using...
runSPIARun SPIA analysis
runTopologyGSARun a topological analysis on an expression dataset using...
runTopologyGSAMultiRun a topological analysis on an expression dataset using...
sales-lab/graphite documentation built on Sept. 20, 2017, 12:06 a.m.