Man pages for sales-lab/graphite
GRAPH Interaction from pathway Topological Environment
| as.list.PathwayList | Convertion of PathwayLists into lists. |
| buildPathway | Build a Pathway object. |
| convertIdentifiers | Convert the node identifiers of a pathway. |
| cytoscapePlot | Plot a pathway graph in Cytoscape |
| Pathway-class | Class '"Pathway"' |
| pathwayDatabases | List the available pathway databases. |
| pathwayGraph | Graph representing the topology of a pathway |
| PathwayList-class | Class '"PathwayList"' |
| pathways | Retrieve a list of pathways. |
| Pathways-class | Class '"Pathways"' |
| prepareSPIA | Prepare pathway dataset needed by runSPIA. |
| runClipper | Run a topological analysis on an expression dataset using... |
| runSPIA | Run SPIA analysis |
| runTopologyGSA | Run a topological analysis on an expression dataset using... |
