convertIdentifiers: Convert the node identifiers of a pathway.

In sales-lab/graphite: GRAPH Interaction from pathway Topological Environment

Convert the node identifiers of a pathway.

Description

Converts the node identifiers of pathways.

If the option Ncpus is set to a value larger than 1 and the package parallel is installed, the conversion procedure will automatically use multiple cores.

Usage

convertIdentifiers(x, to)

Arguments

x	can be a list of pathways or a single pathway
to	a string describing the type of the identifier. Can assume the values "entrez", "symbol" or the name of one of the columns provided by an Annotation package (for example, "UNIPROT").

Value

A Pathway object.

See Also

Pathway

Examples

  r <- pathways("hsapiens", "reactome")
  convertIdentifiers(r$`mTORC1-mediated signalling`, "symbol")

sales-lab/graphite documentation built on Oct. 15, 2023, 9:23 a.m.