pathwayGraph: Graph representing the topology of a pathway

Description Usage Arguments Value See Also Examples

View source: R/graph.R

Description

Builds a graphNEL object representing the topology of a pathway.

Usage

1
  pathwayGraph(pathway, which = "proteins", edge.types = NULL)

Arguments

pathway

a Pathway object.

which

the pathway variant you want.

See Pathway documentation for a list of the supported variants.

edge.types

keep only the edges maching the type names in this vector.

Value

A graphNEL object.

See Also

Pathway

graphNEL

Examples

1
2
  r <- pathways("hsapiens", "reactome")
  pathwayGraph(r$`mTORC1-mediated signalling`, edge.types="Binding")

sales-lab/graphite documentation built on July 20, 2021, 5:36 p.m.