Man pages for sam-bassett/CompGO
An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation
| annotateBedFromDb | Annotate .bed file to genes |
| bed.sample | A sample of 25 rows from a .bed file of mm9 regions |
| compareZscores | Compare the Z scores of individual GO terms between two input... |
| doZtrans.single | Z transform a single functional annotation chart from DAVID |
| gata4 | A .bed file containing genomic ranges sampled from gata4 |
| getFnAnot_genome | Get the functional annotation chart of a gene list using... |
| mef2a | A .bed file containing genomic ranges sampled from mef2a |
| nkx25 | A .bed file containing genomic ranges sampled from nkx25 |
| p300 | A .bed file containing genomic ranges sampled from p300 |
| PCAplot | Plot PCA given an input list of fnAnot charts |
| plotDendrogram | Plot dendrogram given an input list of fnAnot charts |
| plotInteractive | Interactive plotting function for groups of GO terms |
| plotPairwise | Generates a scatterplot of two sets of GO terms based on... |
| plotTwoGODags | Plots a directed acyclic graph of GO terms from two different... |
| plotZRankedDAG | Plot a directed acyclic graph (DAG) based on the corrected... |
| plotZScores | Performs z transform on two sets of GO terms and plots... |
| slidingJaccard | Plot two functional annotation charts using a sliding Jaccard... |
| srf | A .bed file containing genomic ranges sampled from srf |
| tbx5 | A .bed file containing genomic ranges sampled from tbx5 |
| viewKegg | Compare KEGG pathways between two functional annotation... |
| zTransformDirectory | Z-score transformation of DAVID functional annotation charts... |
