plotZScores: Performs z transform on two sets of GO terms and plots...

In sam-bassett/CompGO: An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation

Description

Generates a scatterplot of z transformed GO terms and plots the result along with the Jaccard metric for each GO term and linear fit + correlation.

Usage

plotZScores(setA, setB, cutoff = NULL, plotAbs = TRUE, plotNA = FALSE, model = "lm")

Arguments

setA	DAVIDFunctionalAnnotationChart object to compare
setB	DAVIDFunctionalAnnotationChart object to compare
plotAbs	Whether to plot the absolute values of z-scores or the raw values
plotNA	Whether to remove NAs entirely or set all NAs to 0
model	The model to use when plotting linear fit, default 'lm'
cutoff	If you want to apply a Benjamini corrected P-value cutoff to each list before generating Z scores, supply it here

Examples

data(funChart1)
data(funChart2)
plotZScores(funChart1, funChart2)

sam-bassett/CompGO documentation built on May 29, 2019, 1:01 p.m.