doZtrans.single: Z transform a single functional annotation chart from DAVID
In sam-bassett/CompGO: An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation
Description
Usage
Arguments
Value
Examples
Description
Decomposes each GO term in a functional annotation chart (returned from getFnAnot_genome()) to its Z-score. These tables can be merged for clustering
Usage
1
doZtrans.single(x, name)
Arguments
x
The functional annotation chart to apply the transformation to
name
(optional) The name to give the Z-score column; if not supplied, name is derived from the input variable
Value
A data.frame of GO terms and Z-scores
Examples
1
2
3
4
# Load example fnAnot charts from DAVID:
data(funChart1)
zscore = doZtrans.single(funChart1)
str(zscore)
sam-bassett/CompGO documentation built on May 29, 2019, 1:01 p.m.
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Description Usage Arguments Value Examples
Description
Decomposes each GO term in a functional annotation chart (returned from getFnAnot_genome()) to its Z-score. These tables can be merged for clustering
Usage
1 | doZtrans.single(x, name)
|
Arguments
x |
The functional annotation chart to apply the transformation to |
name |
(optional) The name to give the Z-score column; if not supplied, name is derived from the input variable |
Value
A data.frame of GO terms and Z-scores
Examples
1 2 3 4 | # Load example fnAnot charts from DAVID:
data(funChart1)
zscore = doZtrans.single(funChart1)
str(zscore)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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