plotZRankedDAG: Plot a directed acyclic graph (DAG) based on the corrected...

Description Usage Arguments Examples

Description

This function accepts two functional annotation charts as input, performs a comparison on them using compareZscores() and plots a DAG based on the results. The saturation of each node is computed based on the Pvalue, such that the more significant values are darker in colour.

Usage

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plotZRankedDAG(setA, setB, ont = "BP", n = 100, maxLabel = NULL,
  fullNames = TRUE, Pvalues = TRUE)

Arguments

setA

FunctionalAnnotationChart to compare

setB

FunctionalAnnotationChart to compare

ont

The gene ontology category for which to calculate enrichment

n

The number of top-ranked Pvalues to compare

maxLabel

The maximum number of characters in a node's label

fullNames

Whether to print the full GO term label or just the GO id

Pvalues

Whether to print P-values alongside each label

Examples

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## Not run: 
data(funChart1)
data(funChart2)
plotZRankedDAG(funChart1, funChart2, n = 50)

## End(Not run)

sam-bassett/CompGO documentation built on May 29, 2019, 1:01 p.m.