| .GetMetacellTags |
Source code
|
| .GetMetadataSlot |
Man page
Source code
|
| .GetRowdataSlot |
Man page
Source code
|
| .UpdateSEBasedOnAdjmat |
Source code
|
| .aggregateFeatures4Prostar |
Source code
|
| .onLoad |
Source code
|
| .onUnload |
Source code
|
| .write2excel |
Man page
Source code
|
| Add_Item_to_Dataset |
Man page
Source code
|
| AdjMatFilters |
Man page
Source code
|
| AggregateMetacell |
Man page
Source code
|
| BuildAdjacencyMatrix |
Man page
Source code
|
| BuildColumnToProteinDataset |
Man page
Source code
|
| BuildMetacell |
Man page
Source code
|
| Build_CC_list |
Source code
|
| Children |
Man page
Source code
|
| ConnectedComp,QFeatures-method |
Man page
|
| ConnectedComp,SummarizedExperiment-method |
Man page
|
| ConnectedComp<- |
Man page
|
| ConvertListToHtml |
Man page
Source code
|
| Convert_conf |
Man page
Source code
|
| Convert_server |
Man page
Source code
|
| Convert_ui |
Man page
Source code
|
| CountPep |
Man page
Source code
|
| DaparToolsehd, |
Man page
|
| DaparToolshed |
Man page
|
| DaparToolshed-aggregate |
Man page
|
| ExtendPalette |
Man page
Source code
|
| FunctionFilter |
Man page
Source code
|
| FunctionFilter, |
Man page
|
| FunctionFilter-class |
Man page
|
| GetColorsForConditions |
Man page
Source code
|
| GetDetailedNbPeptides |
Man page
Source code
|
| GetDetailedNbPeptidesUsed |
Man page
Source code
|
| GetExtension |
Man page
Source code
|
| GetMetacell |
Man page
Source code
|
| GetMetacellTags,QFeatures-method |
Man page
|
| GetMetacellTags,SummarizedExperiment-method |
Man page
|
| GetNbPeptidesUsed |
Man page
Source code
|
| GetSoftAvailables |
Man page
Source code
|
| GetUniqueTags,QFeatures-method |
Man page
|
| GetUniqueTags,SummarizedExperiment-method |
Man page
|
| GraphPepProt |
Man page
Source code
|
| Keep_Items_from_Dataset |
Man page
Source code
|
| LH0 |
Man page
Source code
|
| LH0.lm |
Man page
Source code
|
| LH1 |
Man page
Source code
|
| LH1.lm |
Man page
Source code
|
| Metacell_DIA_NN |
Man page
Source code
|
| Metacell_generic |
Man page
Source code
|
| Metacell_maxquant |
Man page
Source code
|
| Metacell_proline |
Man page
Source code
|
| Parent |
Man page
Source code
|
| Pipelines |
Man page
Source code
|
| ProstarVersions |
Man page
Source code
|
| QFeatures-accessors |
Man page
|
| QFeatures-excel |
Man page
|
| QFeatures-filtering-oneSE |
Man page
|
| QFeatures-utils |
Man page
|
| ReplaceSpecialChars |
Man page
Source code
|
| Set_POV_MEC_tags |
Man page
Source code
|
| SymFilteringOperators |
Man page
Source code
|
| UpdateMetacellAfterImputation,SummarizedExperiment-method |
Man page
|
| VariableFilter |
Man page
|
| addColors |
Man page
Source code
|
| adjacency-matrix-filter |
Man page
|
| aggQmetacell |
Man page
Source code
|
| aggregateFeatures4Prostar,QFeatures-method |
Man page
|
| aggregateFeatures4Prostar,SummarizedExperiment-method |
Man page
|
| aggregateIter |
Man page
Source code
|
| aggregateIterParallel |
Man page
Source code
|
| aggregateMean |
Man page
Source code
|
| aggregateMethods |
Man page
Source code
|
| aggregateSum |
Man page
Source code
|
| aggregateTopn |
Man page
Source code
|
| allPeptides |
Man page
Source code
|
| analysis,QFeatures-method |
Man page
|
| analysis,SummarizedExperiment-method |
Man page
|
| analysis<- |
Man page
|
| build-design |
Man page
|
| buildGraph |
Man page
Source code
|
| check.conditions |
Man page
Source code
|
| check.design |
Man page
Source code
|
| createQFeatures |
Man page
Source code
|
| create_ft_example |
Man page
Source code
|
| custom_metacell_colors |
Man page
Source code
|
| design-example |
Man page
|
| design.qf,QFeatures-method |
Man page
|
| design.qf<- |
Man page
|
| display.CC.visNet |
Man page
Source code
|
| dl |
Man page
|
| dl_server |
Man page
Source code
|
| dl_ui |
Man page
Source code
|
| filterFeaturesOneSE |
Man page
|
| filterFeaturesOneSE, |
Man page
|
| filterFeaturesOneSE,QFeatures-method |
Man page
|
| filterFeaturesOneSE,SummarizedExperiment-method |
Man page
|
| finalizeAggregation |
Man page
Source code
|
| ft |
Man page
|
| ft_na |
Man page
|
| fudge2LRT |
Man page
Source code
|
| get.pep.prot.cc |
Man page
Source code
|
| getListNbValuesInLines |
Man page
Source code
|
| getProteinsStats |
Man page
Source code
|
| hc_mvTypePlot2 |
Man page
Source code
|
| idcol,QFeatures-method |
Man page
|
| idcol,SummarizedExperiment-method |
Man page
|
| idcol<- |
Man page
|
| inner.aggregate.iter |
Man page
Source code
|
| inner.aggregate.topn |
Man page
Source code
|
| inner.mean |
Man page
Source code
|
| inner.sum |
Man page
Source code
|
| is.OfType |
Man page
Source code
|
| last_assay |
Man page
Source code
|
| mainAssay |
Man page
Source code
|
| match.metacell |
Man page
Source code
|
| metacell-plots |
Man page
|
| metacell-tree |
Man page
|
| metacell.def |
Man page
Source code
|
| metacellHisto_HC |
Man page
Source code
|
| metacellPerLinesHistoPerCondition_HC |
Man page
Source code
|
| metacellPerLinesHisto_HC |
Man page
Source code
|
| metacombine |
Man page
Source code
|
| mod_Agregation_server |
Man page
Source code
|
| mod_Agregation_ui |
Man page
Source code
|
| mod_Filtering_server |
Man page
Source code
|
| mod_Filtering_ui |
Man page
Source code
|
| mod_Protein_Description_server |
Man page
Source code
Source code
|
| mod_Protein_Description_ui |
Man page
Source code
Source code
|
| mod_Protein_Filtering_server |
Man page
Source code
Source code
|
| mod_Protein_Filtering_ui |
Man page
Source code
Source code
|
| mod_Protein_Normalization_server |
Man page
Source code
Source code
|
| mod_Protein_Normalization_ui |
Man page
Source code
Source code
|
| mod_Protein_server |
Man page
Source code
Source code
|
| mod_Protein_ui |
Man page
Source code
Source code
|
| mod_agregation |
Man page
|
| mod_buildDesign_server |
Man page
Source code
|
| mod_buildDesign_ui |
Man page
Source code
|
| mod_build_qMetacell_FunctionFilter_server |
Man page
Source code
|
| mod_build_qMetacell_FunctionFilter_ui |
Man page
Source code
|
| mod_convert |
Man page
|
| mod_designExample_server |
Man page
Source code
|
| mod_designExample_ui |
Man page
Source code
|
| mod_ds_metacell_server |
Man page
Source code
|
| mod_ds_metacell_ui |
Man page
Source code
|
| mod_filterExample |
Man page
|
| mod_filterExample_server |
Man page
Source code
|
| mod_filterExample_ui |
Man page
Source code
|
| mod_filtering |
Man page
|
| mod_format_DT |
Man page
|
| mod_format_DT_server |
Man page
Source code
|
| mod_format_DT_ui |
Man page
Source code
|
| mod_helpPopover |
Man page
|
| mod_helpPopover_server |
Man page
Source code
|
| mod_helpPopover_ui |
Man page
Source code
|
| mod_infos_dataset |
Man page
|
| mod_infos_dataset_server |
Man page
Source code
|
| mod_infos_dataset_ui |
Man page
Source code
|
| mod_inputGroup |
Man page
|
| mod_inputGroup_server |
Man page
Source code
|
| mod_inputGroup_ui |
Man page
Source code
|
| mod_metacell_tree_server |
Man page
Source code
|
| mod_metacell_tree_ui |
Man page
Source code
|
| mod_open_dataset |
Man page
|
| mod_open_dataset_server |
Man page
Source code
|
| mod_open_dataset_ui |
Man page
Source code
|
| mod_open_demoDataset_server |
Man page
Source code
|
| mod_open_demoDataset_ui |
Man page
Source code
|
| mod_open_demo_dataset |
Man page
|
| mod_query_metacell_server |
Man page
Source code
|
| mod_query_metacell_ui |
Man page
Source code
|
| mod_settings_server |
Man page
Source code
|
| mod_settings_ui |
Man page
Source code
|
| mod_tracker_server |
Man page
Source code
|
| mod_tracker_ui |
Man page
Source code
|
| mvImage |
Man page
Source code
|
| my_hc_ExportMenu |
Man page
Source code
|
| my_hc_chart |
Man page
Source code
|
| nEmptyLines |
Man page
Source code
|
| n_assays_in_qf |
Man page
Source code
|
| names_metacell,QFeatures-method |
Man page
|
| names_metacell,SummarizedExperiment-method |
Man page
|
| names_metacell<- |
Man page
|
| nonzero |
Man page
Source code
|
| params,QFeatures-method |
Man page
|
| params,SummarizedExperiment-method |
Man page
|
| params<- |
Man page
|
| parentProtId,QFeatures-method |
Man page
|
| parentProtId,SummarizedExperiment-method |
Man page
|
| parentProtId<- |
Man page
|
| pepa.test |
Man page
Source code
|
| pipeline-protein |
Man page
|
| pkgs.require |
Man page
Source code
|
| plotJitter |
Man page
Source code
|
| plotJitter_rCharts |
Man page
Source code
|
| qMetacell,QFeatures-method |
Man page
|
| qMetacell,SummarizedExperiment-method |
Man page
|
| qMetacell-filter |
Man page
|
| qMetacell<- |
Man page
|
| qMetacellFilteringScope |
Man page
Source code
|
| qMetacellOnConditions |
Man page
Source code
|
| qMetacellWholeLine |
Man page
Source code
|
| qMetacellWholeMatrix |
Man page
Source code
|
| q_metacell |
Man page
|
| query-metacell |
Man page
|
| query_qMetacell |
Man page
|
| samLRT |
Man page
Source code
|
| search.metacell.tags |
Man page
Source code
|
| server |
Source code
Source code
Source code
Source code
|
| sharedPeptides |
Man page
Source code
|
| shinyInput |
Source code
|
| shinyOutput |
Source code
|
| shinyValue |
Source code
|
| specPeptides |
Man page
Source code
|
| splitAdjacencyMat |
Man page
Source code
|
| subAdjMat_sharedPeptides |
Man page
Source code
|
| subAdjMat_specificPeptides |
Man page
Source code
|
| subAdjMat_topnPeptides |
Man page
Source code
|
| test.design |
Man page
Source code
|
| topnFunctions |
Man page
Source code
|
| topnPeptides |
Man page
Source code
|
| tracking |
Man page
|
| typeDataset,QFeatures-method |
Man page
|
| typeDataset,SummarizedExperiment-method |
Man page
|
| typeDataset<- |
Man page
|
| version,QFeatures-method |
Man page
|
| version<- |
Man page
|
| wrapper.mvImage |
Man page
Source code
|
| write2excel,QFeatures-method |
Man page
|
| write2excel,SummarizedExperiment-method |
Man page
|
