NEWS.md

In sankaranlab/SCAVENGE: Identifying genetic trait/phenotype relevant cell type/state at single cell resolution

SCAVENGE 1.0.2

New features

• Added a NEWS.md file to track changes to the package.
• Removed docs/doc folder in favor of gh-pages branch method.
• Renamed vignette "SCAVENGE-vignette.Rmd" --> "SCAVENGE.Rmd" to make it the Get Started page for pkgdown site.
• Create README.Rmd
• Add rworkflows::use_badges()
• Add CITATION file.
• New internal functions:
• load_rdata
• New exported functions:
• example_data
• Add example_results as data.R
• Add runnable example for all exported functions.
• Add docker vignette.

Bug fixes

• Add Remotes to DESCRIPTION:
• gchromVAR
• BuenColors
• Add URL to DESCRIPTION.
• Remove duplicate rmarkdown entry in DESCRIPTION.
• Remove lazyData: true from DESCRIPTION.
• Update .Rbuildignore.
• Fix all: "no visible binding for global variable" CRAN Notes.
• Make necessary packages IMPORTs:
• SummarizedExperiment
• Make argument explicit in vignettes.
• Replace F --> FALSE
• Make default mycores=1
• Replace all 1:n with seq_len(n)
• get_sigcell_simple:
• Create reproducible example
• Remove defaults of variables that don't exist.
• Remove "." usage and calling functions without the () syntax.
• Save output files as temp files by default.
• Improve vignettes
• Use scale_color_viridis_c to simplify.
• Reformat code to be more readable.
• Add session info at the end.
• Remove dplyr as Dep in favor of native pipe.
• Include as Suggest for vignette only

sankaranlab/SCAVENGE documentation built on March 2, 2023, 2:17 a.m.