FilterBarcodes: Filter barcodes

In sanofi-pi/veni: Generates QC plots, performs ambient RNA removal, and enhanced differential from single cell RNA sequencing data

Description

Filter barcodes

Usage

FilterBarcodes(E, min_genes_before = 0, min_umi_before = 0, keep = T)

Arguments

E	Expression matrix or a list of expression matrices
min_genes_before	All barcodes with less than min_genes_before detected will be removed prior to background correction.
min_umi_before	All barcodes with less than min_umi_before will be removed prior to background correction.
keep	If TRUE, all genes are kept for total counts and genes detected calculation. If FALSE, total counts and genes detected are caculated after discarding mitochondrial and ribosomal genes.

Value

Filtered expression matrices and barcodes

sanofi-pi/veni documentation built on Oct. 12, 2020, 10:17 p.m.