GetCutoffs: Get suggested filter values

In sanofi-pi/veni: Generates QC plots, performs ambient RNA removal, and enhanced differential from single cell RNA sequencing data

Description

Get suggested filter values

Usage

GetCutoffs(E, verbose = T, min_counts = 100, max_counts = 1000)

Arguments

E	Expression matrix or a list of expression matrices, see ?Read_h5
verbose	If false, hides output dialog
min_counts	Minimum counts for outlier detection, default is 100.
max_counts	Maximum counts for outlier detection, default is 1000.

Value

List where each element is a data frame with min_umi and min_genes_detected filters

sanofi-pi/veni documentation built on Oct. 12, 2020, 10:17 p.m.