make_mdl_frame: Make Model Frame

In santiago1234/codonr: What The Package Does (one line, title case required)

Description

Make Model Frame

Usage

make_mdl_frame(log2FCtimecourse_dp, pls_optimality_dp, utrs_dp,
  kmers_to_keep, .sample_condition = "wt_ribo", .maternal = TRUE,
  add_utr_len = FALSE, minimum_time_point = -1)

Arguments

log2FCtimecourse_dp	character to file path: data/19-02-05-FoldChangeData/data/log2FC_earlyVSlate_tidytimecourse.csv
pls_optimality_dp	character to file path: results/19-01-18-ObtainEstimateOfCodonOptimalityPLS/results_data/pls_components_fish_genes.csv
utrs_dp	character to file path: data/19-01-17-Get-ORFS-UTRS-codon-composition/sequence-data/fish_seq_data_cds_3utr.csv
kmers_to_keep	character vector of k-mers to add, this predictor represents the number of times that a k-mer is present in the 3' UTR seqs
.sample_condition	character any of aamanit2in_polya wt_polya wt_ribo
.maternal	logical, True only matenal genes, assume there is column is_maternal
add_utr_len	lgl, add the utr length (nucleotides) as a predictor, utr is log transformed
minimum_time_point	numeric lowest time point used for modeling

Value

tibble model frame

santiago1234/codonr documentation built on Dec. 9, 2019, 10:15 a.m.