codon_composition: Codon Composition of Sequences
In santiago1234/codonr: What The Package Does (one line, title case required)
Description
Usage
Arguments
Value
Examples
Description
Codon Composition of Sequences
Usage
1
codon_composition(orfs, orf_col, id_col)
Arguments
orfs
tibble, data with cds sequences
orf_col
character, column name containing cds
id_col
character, column name with gene/name id
Value
tible n by x, codon counts for each sequence, n is the number
of sequences and x is the number of codons (x=61) it may contain more thant
61 in case there is a codon loke ACN
Examples
1
2
orf <- tibble::tibble(cds = c("ACGTTT", "TTTCCC"), id = c("s0", "s1"))
codon_composition(orf, orf_col = "cds", id_col = "id")
santiago1234/codonr documentation built on Dec. 9, 2019, 10:15 a.m.
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Description Usage Arguments Value Examples
Description
Codon Composition of Sequences
Usage
1 | codon_composition(orfs, orf_col, id_col)
|
Arguments
orfs |
tibble, data with cds sequences |
orf_col |
character, column name containing cds |
id_col |
character, column name with gene/name id |
Value
tible n by x, codon counts for each sequence, n is the number of sequences and x is the number of codons (x=61) it may contain more thant 61 in case there is a codon loke ACN
Examples
1 2 | orf <- tibble::tibble(cds = c("ACGTTT", "TTTCCC"), id = c("s0", "s1"))
codon_composition(orf, orf_col = "cds", id_col = "id")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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