nucleotide_distance: Nucleotide distance

In santiago1234/iCodon: iCodon: Designing "ideal" coding (iCodon) sequences for customized expression level

Nucleotide distance

Description

compute the number of nucleotide differences between the two sequences assumes the sequences are same length and aligned

Usage

nucleotide_distance(seq_variant1, seq_variant2, proportion = FALSE)

Arguments

seq_variant1	string: coding dna, must be in frame
seq_variant2	string: coding dna, must be in frame
proportion	logical: if true, returns the distance as a proportion (1 = all codons are different, 0 = no differences)

Value

int, number of codon diferences

Examples

nucleotide_distance("ATGCTG", "ATGCTT")

santiago1234/iCodon documentation built on Nov. 2, 2023, 2:03 p.m.