predict_stability: Predict mRNA stability functional factory
In santiago1234/iCodon: iCodon: Designing "ideal" coding (iCodon) sequences for customized expression level
View source: R/predict-stability.R
predict_stability R Documentation
Predict mRNA stability functional factory
Description
This function will generate a function that predicts the mRNA stability of the
given species in the input sequences The prediction is generated with the model:
mrna_stability_model. The output function will take as input a set of
dna sequences (vector) these sequences should not contain repeated elements
Usage
predict_stability(specie)
Arguments
specie
character: one of human, mouse, fish, or xenopus
Value
numeric vector with predicted decay rate
Examples
predictor_fish <- predict_stability("fish")
some_seqs <- testing$coding[1:3]
predicted_stability <- predictor_fish(some_seqs)
santiago1234/iCodon documentation built on Nov. 2, 2023, 2:03 p.m.
R Package Documentation
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View source: R/predict-stability.R
| predict_stability | R Documentation |
Predict mRNA stability functional factory
Description
This function will generate a function that predicts the mRNA stability of the
given species in the input sequences The prediction is generated with the model:
mrna_stability_model. The output function will take as input a set of
dna sequences (vector) these sequences should not contain repeated elements
Usage
predict_stability(specie)
Arguments
specie |
character: one of human, mouse, fish, or xenopus |
Value
numeric vector with predicted decay rate
Examples
predictor_fish <- predict_stability("fish")
some_seqs <- testing$coding[1:3]
predicted_stability <- predictor_fish(some_seqs)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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