selection: Selection (functional factory)
In santiago1234/iCodon: iCodon: Designing "ideal" coding (iCodon) sequences for customized expression level
selection R Documentation
Selection (functional factory)
Description
produces a function for the selection. This function performs the following"
1. for a set of synonymous sequences predicts the mRNA stability with @param stability_predictor
2. Using the selection criterion @param optimization selects the fittest individual
Usage
selection(stability_predictor, optimization = TRUE)
Arguments
stability_predictor
mRNA stability preditor: takes as input a dna sequence
and produces a predicted stability (decay rate)
optimization
logical: True for optimization (more stable sequence) and False
for deoptimization (more unstable sequence)
Value
function, selector function that take as input:
This function contains the following arguments:
syn_daughters character: synonymous sequences to evaluate (only for output function)
current_iteration integer: current iteration (only for output function)
santiago1234/iCodon documentation built on Nov. 2, 2023, 2:03 p.m.
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| selection | R Documentation |
Selection (functional factory)
Description
produces a function for the selection. This function performs the following" 1. for a set of synonymous sequences predicts the mRNA stability with @param stability_predictor 2. Using the selection criterion @param optimization selects the fittest individual
Usage
selection(stability_predictor, optimization = TRUE)
Arguments
stability_predictor |
mRNA stability preditor: takes as input a dna sequence and produces a predicted stability (decay rate) |
optimization |
logical: True for optimization (more stable sequence) and False for deoptimization (more unstable sequence) |
Value
function, selector function that take as input:
This function contains the following arguments:
syn_daughters character: synonymous sequences to evaluate (only for output function)
current_iteration integer: current iteration (only for output function)
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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