GoTheDist: Calculate the distance matrix between genes based on GO...
In saralinker/GONetwork: Similarity matrix optimized for sparse hierarchical networks
Description
Usage
Arguments
Value
Description
.
Usage
1
2
GoTheDist(M, Min = 4, minparents = 8, MinRow = 0, maxthreads = 3,
method = "cosine")
Arguments
M
matrix of GO terms for each gene
Min
Cutoff to exclude low frequency GO terms. Minimum number of genes that contain the GO term. default = 4.
minparents
Cutoff to exclude non-informative GO terms (ex: nucleus vs. Pol-II transcription factor). defualt = 8.
MinRow
Value
matrix in a cytoscape-friendly format
saralinker/GONetwork documentation built on May 29, 2019, 1:50 p.m.
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Description Usage Arguments Value
Description
.
Usage
1 2 | GoTheDist(M, Min = 4, minparents = 8, MinRow = 0, maxthreads = 3,
method = "cosine")
|
Arguments
M |
matrix of GO terms for each gene |
Min |
Cutoff to exclude low frequency GO terms. Minimum number of genes that contain the GO term. default = 4. |
minparents |
Cutoff to exclude non-informative GO terms (ex: nucleus vs. Pol-II transcription factor). defualt = 8. |
MinRow |
Value
matrix in a cytoscape-friendly format
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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