Description Usage Arguments Value
View source: R/AssignCluster.R
assign clusters for each gene based on GO distance. By default, it incorporates this "group" into the cytoscape file
1 | AssignCluster(tab, D, K = 10, rmv_stragglers = TRUE, cutoff = 0.3)
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tab, |
output from cyto() |
K, |
number of groups to subset genes into |
rmv_stragglers, |
run a second round of clustering after removing the unclustered genes default = TRUE |
return_in_cytotable, |
returns the group numbers automatically into the original table provided from cyto(). Alternatively, you can set this to FALSE and simply return the group for each gene. |
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