AssignCluster: AssignCluster

Description Usage Arguments Value

View source: R/AssignCluster.R

Description

assign clusters for each gene based on GO distance. By default, it incorporates this "group" into the cytoscape file

Usage

1
AssignCluster(tab, D, K = 10, rmv_stragglers = TRUE, cutoff = 0.3)

Arguments

tab,

output from cyto()

K,

number of groups to subset genes into

rmv_stragglers,

run a second round of clustering after removing the unclustered genes default = TRUE

return_in_cytotable,

returns the group numbers automatically into the original table provided from cyto(). Alternatively, you can set this to FALSE and simply return the group for each gene.

Value

.


saralinker/GONetwork documentation built on May 29, 2019, 1:50 p.m.