cyto: Convert distance matrix to a cytoscape formatted table
In saralinker/GONetwork: Similarity matrix optimized for sparse hierarchical networks
Description
Usage
Arguments
Value
Description
.
Usage
1
Arguments
D,
matrix of gene distances based on GO terms
cutoff,
minimum distance between nodes
remove.dups,
default = FALSE This will remove self-loops. This is an advantage for visulazing in cytoscape. If you continue on to calling groups make sure this is set to FALSE because cytoscape will only color nodes that are in the origin column, thereby missing the remaining nodes.
Value
matrix in a cytoscape-friendly format
saralinker/GONetwork documentation built on May 29, 2019, 1:50 p.m.
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Description Usage Arguments Value
Description
.
Usage
1 |
Arguments
D, |
matrix of gene distances based on GO terms |
cutoff, |
minimum distance between nodes |
remove.dups, |
default = FALSE This will remove self-loops. This is an advantage for visulazing in cytoscape. If you continue on to calling groups make sure this is set to FALSE because cytoscape will only color nodes that are in the origin column, thereby missing the remaining nodes. |
Value
matrix in a cytoscape-friendly format
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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