exportResults.edgeR: Export results for edgeR analyses

In sarangian/RNASeqDEA: Differential Expression Analysis based on the read count data generated by either of Salmon, Kallisto, featureCounts and perform statistical analysis to discover quantitative changes in expression levels between two different experimental groups

Description

Export counts and edgeR results

Usage

exportResults.edgeR(out.edgeR, group, counts, alpha = 0.05,
  export = TRUE)

Arguments

out.edgeR	the result of run.edgeR()
group	factor vector of the condition from which each sample belongs
counts	non-filtered counts (used to keep them in the final table)
alpha	threshold to apply to adjusted p-values
export	TRUE to export the results (up, down and complete table) in the tables directory

Details

counts are used as input just in order to export features with null counts too.

Value

A list of data.frame containing counts, pvalues, FDR, log2FC...

Author(s)

Marie-Agnes Dillies and Hugo Varet

sarangian/RNASeqDEA documentation built on Dec. 8, 2019, 5:24 p.m.