exportResults.edgeR: Export results for edgeR analyses

Description Usage Arguments Details Value Author(s)

View source: R/exportResults.edgeR.R

Description

Export counts and edgeR results

Usage

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exportResults.edgeR(out.edgeR, group, counts, alpha = 0.05,
  export = TRUE)

Arguments

out.edgeR

the result of run.edgeR()

group

factor vector of the condition from which each sample belongs

counts

non-filtered counts (used to keep them in the final table)

alpha

threshold to apply to adjusted p-values

export

TRUE to export the results (up, down and complete table) in the tables directory

Details

counts are used as input just in order to export features with null counts too.

Value

A list of data.frame containing counts, pvalues, FDR, log2FC...

Author(s)

Marie-Agnes Dillies and Hugo Varet


sarangian/RNASeqDEA documentation built on Dec. 8, 2019, 5:24 p.m.