locusdef.danRer10.5kb_outside_upstream: locusdef.danRer10.5kb_outside_upstream locus definition

In sartorlab/chipenrich.data: Companion package to chipenrich

locusdef.danRer10.5kb_outside_upstream locus definition

Description

A LocusDefinition where a gene locus is defined as the region beyond 5kb upstream of the TSS and bounded by the midpoint between the TSS and the next upstream TSS.

Usage

locusdef.danRer10.5kb_outside_upstream

Format

A LocusDefinition object with the following slots:

granges

A GRanges of the locus definitions with mcols for Entrez Gene ID gene_id and gene symbol symbol

dframe

A data.frame of the locus definitions with columns for chr, start, end, gene_id, and symbol

genome.build

A character indicating the genome build. In this case, danRer10.

organism

A character indicating the organism name. In this case, Danio rerio.

Details

Built on Fri Apr 13 09:54:26 2018.

Source

R packages: TxDb.Drerio.UCSC.danRer10.refGene_3.4.2 and org.Dr.eg.db_3.5.0.

sartorlab/chipenrich.data documentation built on Oct. 4, 2023, 5:21 p.m.