locusdef.rn5.1kb_outside_upstream: locusdef.rn5.1kb_outside_upstream locus definition
In sartorlab/chipenrich.data: Companion package to chipenrich
locusdef.rn5.1kb_outside_upstream R Documentation
locusdef.rn5.1kb_outside_upstream locus definition
Description
A LocusDefinition where a gene locus is defined as the region beyond 1kb upstream of the TSS and bounded by the midpoint between the TSS and the next upstream TSS.
Usage
locusdef.rn5.1kb_outside_upstream
Format
A LocusDefinition object with the following slots:
- granges
A GRanges of the locus definitions with mcols for Entrez Gene ID gene_id and gene symbol symbol
- dframe
A data.frame of the locus definitions with columns for chr, start, end, gene_id, and symbol
- genome.build
A character indicating the genome build. In this case, rn5.
- organism
A character indicating the organism name. In this case, Rattus norvegicus.
Details
Built on Fri Apr 13 09:52:19 2018.
Source
R packages: TxDb.Rnorvegicus.UCSC.rn5.refGene_3.4.2 and org.Rn.eg.db_3.5.0.
sartorlab/chipenrich.data documentation built on Oct. 4, 2023, 5:21 p.m.
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| locusdef.rn5.1kb_outside_upstream | R Documentation |
locusdef.rn5.1kb_outside_upstream locus definition
Description
A LocusDefinition where a gene locus is defined as the region beyond 1kb upstream of the TSS and bounded by the midpoint between the TSS and the next upstream TSS.
Usage
locusdef.rn5.1kb_outside_upstream
Format
A LocusDefinition object with the following slots:
- granges
A
GRangesof the locus definitions withmcolsfor Entrez Gene IDgene_idand gene symbolsymbol- dframe
A
data.frameof the locus definitions with columns forchr,start,end,gene_id, andsymbol- genome.build
A
characterindicating the genome build. In this case, rn5.- organism
A
characterindicating the organism name. In this case, Rattus norvegicus.
Details
Built on Fri Apr 13 09:52:19 2018.
Source
R packages: TxDb.Rnorvegicus.UCSC.rn5.refGene_3.4.2 and org.Rn.eg.db_3.5.0.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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