locusdef.rn5.nearest_gene: locusdef.rn5.nearest_gene locus definition

In sartorlab/chipenrich.data: Companion package to chipenrich

locusdef.rn5.nearest_gene locus definition

Description

A LocusDefinition where a gene locus is defined as the region spanning the midpoints between adjacent TSSs and TESs.

Usage

locusdef.rn5.nearest_gene

Format

A LocusDefinition object with the following slots:

granges

A GRanges of the locus definitions with mcols for Entrez Gene ID gene_id and gene symbol symbol

dframe

A data.frame of the locus definitions with columns for chr, start, end, gene_id, and symbol

genome.build

A character indicating the genome build. In this case, rn5.

organism

A character indicating the organism name. In this case, Rattus norvegicus.

Details

Built on Fri Apr 13 09:52:16 2018.

Source

R packages: TxDb.Rnorvegicus.UCSC.rn5.refGene_3.4.2 and org.Rn.eg.db_3.5.0.

sartorlab/chipenrich.data documentation built on Oct. 4, 2023, 5:21 p.m.