peaks_E2F4: ChIP-seq Peaks for the E2F4 Transcription Factor

In sartorlab/chipenrich.data: Companion package to chipenrich

ChIP-seq Peaks for the E2F4 Transcription Factor

Description

A dataset containing the binding locations (peaks) of the transcription factor E2F4 called from a ChIP-seq experiment

Usage

peaks_E2F4

Format

A data frame containing 16,245 peak binding locations. Each row is a peak location, and the 3 variables/columns are chromosome, start peak coordinate, and end peak coordinate. Peak coordinates are in hg19 (UCSC) coordinates.

Source

The data and information regarding the experiment can be found in the following publication:

Lee, B. K., A. A. Bhinge, et al. (2011). "Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis." Nucleic Acids Res 39(9): 3558-3573.

Examples

# Load E2F4 peak data. 
data(peaks_E2F4)

# Print the first 10 peaks in the dataset.
print(head(peaks_E2F4))

sartorlab/chipenrich.data documentation built on Oct. 4, 2023, 5:21 p.m.