peaks_H3K4me3_GM12878: ChIP-seq Peaks for the Histone Modification H3K4me3 in...

In sartorlab/chipenrich.data: Companion package to chipenrich

ChIP-seq Peaks for the Histone Modification H3K4me3 in GM12878

Description

A dataset containing the binding locations (peaks) of the histone modification H3K4me3 called from a ChIP-seq experiment in the GM12878 cell line

Usage

peaks_H3K4me3_GM12878

Format

A data frame containing 57,476 peak binding locations. Each row is a peak location, and the 3 variables/columns are chromosome, start peak coordinate, and end peak coordinate. Peak coordinates are in hg19 (UCSC) coordinates.

Source

The data and information regarding the experiment can be found at the following ENCODE URL:

http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeBroadHistone/wgEncodeBroadHistoneGm12878H3k04me3StdPkV2.broadPeak.gz

Examples

# Load H3K4me3 in GM12878 peak data. 
data(peaks_H3K4me3_GM12878)

# Print the first 10 peaks in the dataset.
print(head(peaks_H3K4me3_GM12878))

sartorlab/chipenrich.data documentation built on Oct. 4, 2023, 5:21 p.m.