Description Usage Arguments Value Examples
Plate median of the given colony area of a plate. It removes colony area of empty indices before computing the median of the plate.
1 | plate_median(empty_indices = NULL, colony_area_raw_data, na.rm = TRUE)
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empty_indices |
A numeric vector of indexed empty locations. It can also be the indices of control colonies grown on a plate, which may be used for normalizing the colony area of a plate |
colony_area_raw_data |
A numeric vector of raw data representing the area yeast grown at a specific location on a nutrient medium agar plate |
Numeric value with plate_median of the given
colony_area_raw_data
1 2 3 4 5 6 7 8 9 10 11 | data_area <- simulated_data_1536(data_384 = colonyarea$data_subtypes,
in_data_flow = "across",
out_data_flow = "down",
is_plate_coords = TRUE)
empty_indices <- which(convert_small_to_large(plate_from = 384,
plate_to = 1536,
data_from = colonyarea$data_subtypes,
in_data_flow = 'across',
out_data_flow = "down",
is_plate_coords = FALSE)$y %in% 'Empty')
plate_median(empty_indices, data_area$y) # 600
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