colonyarea: Yeast Colony Area on 384 Plate Format

In sathishsrinivasank/pinerrordetector: Detection of Pinning Errors of Robotic Machines used in SGA Yeast Screen

Description

A dataset containing the plate coordinates, and data subtypes obtained by categorizing the colony area of yeast using plate growth median on a 384 plate format. The data is arranged rowwise format (across). See the rowwise arrangement of colonyarea in the example given below.

Usage

colonyarea

Format

A data frame with 384 rows and 3 variables.

[, 1]	row	Horizontal coordinates of a plate. It must have character class.
[, 2]	column	Vertical coordinates of a plate. It must have numeric class.
[, 3]	data_subtypes	It must have character class indicating the data subtypes.

Author(s)

Sathish Kumar Srinivasan [e-mail]

Examples

legend_txt_bg_col <- c('Empty'                     = 'red',
                       'Pinning Error'             = 'black',
                       'Morethan Plate Median'     = '#660066',
                       'Lessthan Plate Median'     = 'green',
                       'Morethan 90% Plate Median' = 'cyan',
                       'Lessthan 25% Plate Median' = 'yellow',
                       'Excluded Colonies'         = 'blue')
data_subtypes_384 <- colonyarea$data_subtypes
plateformat <- 1536
across_1536 <- convert_small_to_large(plate_from = 384,
                                      plate_to = 1536,
                                      data_from = data_subtypes_384,
                                      in_data_flow = 'across',
                                      out_data_flow = 'across',
                                      is_plate_coords = TRUE)
plot_platemap(plateformat = plateformat,
              plot_data = across_1536,
              legend_txt_bg_col = legend_txt_bg_col)

sathishsrinivasank/pinerrordetector documentation built on May 7, 2019, 2:55 a.m.