convert_down_across: Convert data into rowwise(across) or coloumnwise(down) within...

In sathishsrinivasank/pinerrordetector: Detection of Pinning Errors of Robotic Machines used in SGA Yeast Screen

Description

Convert data into rowwise(across) or coloumnwise(down) within a plate format

Usage

convert_down_across(plateformat, data_from, is_plate_coords = TRUE,
  in_data_flow, out_data_flow)

Arguments

plateformat	An integer which can be one of 96 or 384 or 1536 or 6144
data_from	data vector required for conversion
is_plate_coords	logical returns plate coordinates, if its TRUE
in_data_flow	A string indicating the format of the given data in data_from. It can take a value of either down or across.
out_data_flow	A string indicating the function to output the data to a desired format. It can take a value either of down or across.

Details

Make sure the length of the given data in data_from argument matches the value in plateformat

Value

dataframe of converted data from across to down or vice versa.

Examples

legend_txt_bg_col <- c('Empty'                     = 'red',
                       'Pinning Error'             = 'black',
                       'Morethan Plate Median'     = '#660066',
                       'Lessthan Plate Median'     = 'green',
                       'Morethan 90% Plate Median' = 'cyan',
                       'Lessthan 25% Plate Median' = 'yellow',
                       'Excluded Colonies'         = 'blue')
plateformat <- 384
across_384 <- convert_down_across(plateformat = plateformat,
                                  data_from = colonyarea$data_subtypes,
                                  is_plate_coords = TRUE,
                                  in_data_flow = 'across',
                                  out_data_flow = 'across')

plot_platemap(plateformat = plateformat,
              plot_data = across_384,
              legend_txt_bg_col = legend_txt_bg_col)

# Note the data structure is not disturbed after converting
# rowwise(across) to columnwise(down). Also, try in_data_flow = 'down'

across_down_384 <- convert_down_across(plateformat = plateformat,
                                       data_from = colonyarea$data_subtypes,
                                       is_plate_coords = TRUE,
                                       in_data_flow = 'across',
                                       out_data_flow = 'down')

plot_platemap(plateformat = plateformat,
              plot_data = across_down_384,
              legend_txt_bg_col = legend_txt_bg_col)

sathishsrinivasank/pinerrordetector documentation built on May 7, 2019, 2:55 a.m.