legend2: legend2

In sathishsrinivasank/pinerrordetector: Detection of Pinning Errors of Robotic Machines used in SGA Yeast Screen

Description

This is a modified function of legend found in graphics package. Three lines are commented out to prevent xy.coords from determining the legend coordinates. All parameters are the same as given in the legend function of graphics package of version 3.1.2.

Usage

legend2(x, y = NULL, legend, fill = NULL, col = par("col"),
  border = "black", lty, lwd, pch, angle = 45, density = NULL,
  bty = "o", bg = par("bg"), box.lwd = par("lwd"), box.lty = par("lty"),
  box.col = par("fg"), pt.bg = NA, cex = 1, pt.cex = cex,
  pt.lwd = lwd, xjust = 0, yjust = 1, x.intersp = 1, y.intersp = 1,
  adj = c(0, 0.5), text.width = NULL, text.col = par("col"),
  text.font = NULL, merge = do.lines && has.pch, trace = FALSE,
  plot = TRUE, ncol = 1, horiz = FALSE, title = NULL, inset = 0, xpd,
  title.col = text.col, title.adj = 0.5, seg.len = 2)

Arguments

x, y	the x and y co-ordinates to be used to position the legend. They can be specified by keyword or in any way which is accepted by xy.coords: See ‘Details’.
legend	a character or expression vector of length ≥ 1 to appear in the legend. Other objects will be coerced by as.graphicsAnnot.
fill	if specified, this argument will cause boxes filled with the specified colors (or shaded in the specified colors) to appear beside the legend text.
col	the color of points or lines appearing in the legend.
border	the border color for the boxes (used only if fill is specified).
lty, lwd	the line types and widths for lines appearing in the legend. One of these two must be specified for line drawing.
pch	the plotting symbols appearing in the legend, as numeric vector or a vector of 1-character strings (see points). Unlike points, this can all be specified as a single multi-character string. Must be specified for symbol drawing.
angle	angle of shading lines.
density	the density of shading lines, if numeric and positive. If NULL or negative or NA color filling is assumed.
bty	the type of box to be drawn around the legend. The allowed values are "o" (the default) and "n".
bg	the background color for the legend box. (Note that this is only used if bty != "n".)
box.lty, box.lwd, box.col	the line type, width and color for the legend box (if bty = "o").
pt.bg	the background color for the points, corresponding to its argument bg.
cex	character expansion factor relative to current par("cex"). Used for text, and provides the default for pt.cex and title.cex.
pt.cex	expansion factor(s) for the points.
pt.lwd	line width for the points, defaults to the one for lines, or if that is not set, to par("lwd").
xjust	how the legend is to be justified relative to the legend x location. A value of 0 means left justified, 0.5 means centered and 1 means right justified.
yjust	the same as xjust for the legend y location.
x.intersp	character interspacing factor for horizontal (x) spacing.
y.intersp	the same for vertical (y) line distances.
adj	numeric of length 1 or 2; the string adjustment for legend text. Useful for y-adjustment when labels are plotmath expressions.
text.width	the width of the legend text in x ("user") coordinates. (Should be positive even for a reversed x axis.) Defaults to the proper value computed by strwidth(legend).
text.col	the color used for the legend text.
text.font	the font used for the legend text, see text.
merge	logical; if TRUE, merge points and lines but not filled boxes. Defaults to TRUE if there are points and lines.
trace	logical; if TRUE, shows how legend does all its magical computations.
plot	logical. If FALSE, nothing is plotted but the sizes are returned.
ncol	the number of columns in which to set the legend items (default is 1, a vertical legend).
horiz	logical; if TRUE, set the legend horizontally rather than vertically (specifying horiz overrides the ncol specification).
title	a character string or length-one expression giving a title to be placed at the top of the legend. Other objects will be coerced by as.graphicsAnnot.
inset	inset distance(s) from the margins as a fraction of the plot region when legend is placed by keyword.
xpd	if supplied, a value of the graphical parameter xpd to be used while the legend is being drawn.
title.col	color for title.
title.adj	horizontal adjustment for title: see the help for par("adj").
seg.len	the length of lines drawn to illustrate lty and/or lwd (in units of character widths).

Details

Arguments x, y, legend are interpreted in a non-standard way to allow the coordinates to be specified via one or two arguments. If legend is missing and y is not numeric, it is assumed that the second argument is intended to be legend and that the first argument specifies the coordinates.

The coordinates can be specified in any way which is accepted by xy.coords. If this gives the coordinates of one point, it is used as the top-left coordinate of the rectangle containing the legend. If it gives the coordinates of two points, these specify opposite corners of the rectangle (either pair of corners, in any order).

The location may also be specified by setting x to a single keyword from the list "bottomright", "bottom", "bottomleft", "left", "topleft", "top", "topright", "right" and "center". This places the legend on the inside of the plot frame at the given location. Partial argument matching is used. The optional inset argument specifies how far the legend is inset from the plot margins. If a single value is given, it is used for both margins; if two values are given, the first is used for x- distance, the second for y-distance.

Attribute arguments such as col, pch, lty, etc, are recycled if necessary: merge is not. Set entries of lty to 0 or set entries of lwd to NA to suppress lines in corresponding legend entries; set pch values to NA to suppress points.

Points are drawn after lines in order that they can cover the line with their background color pt.bg, if applicable.

See the examples for how to right-justify labels.

Since they are not used for Unicode code points, values -31:-1 are silently omitted, as are NA and "" values.

Value

returns legend symbol and text

sathishsrinivasank/pinerrordetector documentation built on May 7, 2019, 2:55 a.m.