FindBridgeIntegrationAnchors | R Documentation |
Find a set of anchors between unimodal query and the other unimodal reference
using a pre-computed BridgeReferenceSet
.
These integration anchors can later be used to integrate query and reference
using the IntegrateEmbeddings
object.
FindBridgeIntegrationAnchors(
extended.reference,
query,
query.assay = NULL,
dims = 1:30,
scale = FALSE,
reduction = c("lsiproject", "pcaproject"),
integration.reduction = c("direct", "cca"),
verbose = TRUE
)
extended.reference |
BridgeReferenceSet object generated from
|
query |
A query Seurat object |
query.assay |
Assay name for query-bridge integration |
dims |
Number of dimensions for query-bridge integration |
scale |
Determine if scale the query data for projection |
reduction |
Dimensional reduction to perform when finding anchors. Options are:
|
integration.reduction |
Dimensional reduction to perform when finding anchors between query and reference. Options are:
|
verbose |
Print messages and progress |
Returns an AnchorSet
object that can be used as input to
IntegrateEmbeddings
.
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