FindSubCluster: Find subclusters under one cluster

In satijalab/seurat: Tools for Single Cell Genomics

Find subclusters under one cluster

Description

Find subclusters under one cluster

Usage

FindSubCluster(
  object,
  cluster,
  graph.name,
  subcluster.name = "sub.cluster",
  resolution = 0.5,
  algorithm = 1
)

Arguments

object	An object
cluster	the cluster to be sub-clustered
graph.name	Name of graph to use for the clustering algorithm
subcluster.name	the name of sub cluster added in the meta.data
resolution	Value of the resolution parameter, use a value above (below) 1.0 if you want to obtain a larger (smaller) number of communities.
algorithm	Algorithm for modularity optimization (1 = original Louvain algorithm; 2 = Louvain algorithm with multilevel refinement; 3 = SLM algorithm; 4 = Leiden algorithm). Leiden requires the leidenalg python.

Value

return a object with sub cluster labels in the sub-cluster.name variable

satijalab/seurat documentation built on May 11, 2024, 4:04 a.m.